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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 2e-32
 Query name: gi|1035264111|ref|XP_016897738.1| PREDICTED: selenoprotein Pb-like isoform X2 [Cynoglossus semilaevis]
 Query range: 1-187  (total 248)

 Target: /data/www-rg/seblastian_results/498230855/tempfiles/temptarget.fasta
 Chromosome: OMLM01003153.1:subseq_0,43959_ Strand: -
 Positions:
 -Exon 1  20309        20535
 -Exon 2  19376        19588
 -Exon 3  18879        18999

 Redox box: YES

Query   MRCVSFLWLCAAIPGVVFSAHTTLLVEGDRNVSRICKPAPHWEIQGQAPMKELLGNVVVVALLKATUHFCLTQAYK <---Intron---> IGGLRDKL
        || /  |/| ||/|| / // |||||||| / |/||||||||||/|/|||||||||| |||||||/| ||| ||   <   720bp    > | ||||/|
Target  MRSLLLLYLYAALPGALCASQTTLLVEGDNDASKICKPAPHWEIRGKAPMKELLGNVAVVALLKASUQFCLVQAAN                IKGLRDRL
        actcttctctggccggctgtcaaccggggaggtaatacgcctgaagagcaagccgagggggccagatcttcgcgga                aagccgac
        tgcttttatacctcgctgccacctttagaaaccatgacccagatggacctaattgatcttcttacggatgttacca                tagtgagt
        gctcgggtctgagatggcgcacaggggacttccgccatcacggcaagacgggggataggggaggtcagctctgca                ctacgtcag
                                                                          *                                 

Query   NRSNLTGVSFMIVNEQEAESRAMYWELKRRAPPDVPVYQQGPFQDDVWETLDGDKDDFLVYDR <---Intron---> CGLLTFHIVLPYSFLQYPYVE
        |||||| ||||||||/|  ||||||||||||||/||||||   | |||| ||||||||||||| <   376bp    > ||||||||||||||| |||||
Target  NRSNLTEVSFMIVNEREPHSRAMYWELKRRAPPNVPVYQQAALQSDVWEILDGDKDDFLVYDR                CGLLTFHIVLPYSFLHYPYVE
        acaacaggttaagagcgcctagattgcaaagccagcgtccggccaggtgacgggaggtcgtga                tgccatcagtctatcctctgg
        aggatcatcttttaagacacgctagataggcccatctaaacctagatgattagaaaatttaag                ggttctatttcagttaacata
        ccccggggtcgaacgagttcaagcggggaggcctttgcggtctattgggtgttcatccgctt                gcttcccttgaacttgttatag
                                                                                                            

Query   AAVRATYLKNICNCSPLNN
        ||/|||| |||||||  |/
Target  AAIRATYHKNICNCSVSNH
        ggaagatcaaatattgaac
        cctgccaaaatgagctgaa
        tacatttcatccccagttc
                           
 Sequence until next stop: 
ACAAAATGCACACAAACACACAAACAAAAGGGCAAAAGGGGACAAGTGGTTCAAAAAAGGTAA
 T  K  C  T  Q  T  H  K  Q  K  G  K  R  G  Q  V  V  Q  K  R  * 

 Distance CDS-SECIS: 1115 ; UGA-SECIS: 1475

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01003153.1:subseq_0,43959_ Strand = - Positions = 17763 - 17686
 Found by:  Infernal (score=25.51) Covels (score=24.98)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 1, 0
 Free Energy = -9.67

         ..(((((((.......((((((((((((.(((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(({((((.--....{[[[((({((((.((.................))))))})))]]]}......-...))))}))..
 target  UGUUCUCUCA--UUAAUGAAGUCAACAGUGUAAAACCUGCCUGCAGGAACCUGUAGAUGGAUGUGUGU-GAGGAGAUGGGG
                         ****           ^^^                        ****